@inproceedings {330, title = {Improved interactive medical image segmentation using Enhanced Intelligent Scissors (EIS)}, booktitle = {30th Annual Conference of the IEEE Engineering in Medicine and Biology Society}, year = {2008}, month = {08/2008}, address = {Vancouver, British Columbia, Canada}, abstract = {

A novel interactive approach called Enhanced Intelligent Scissors (EIS) is presented for segmenting regions of interest in medical images. The proposed interactive medical image segmentation algorithm addresses the issues associated with segmenting medical images and allows for fast, robust, and flexible segmentation without requiring accurate manual tracing. A robust complex wavelet phase-based representation is used as an external local cost to address issues associated with contrast non-uniformities and noise typically found in medical images. The boundary extraction problem is formulated as a Hidden Markov Model (HMM) and the novel approach to the second-order Viterbi algorithm with state pruning is used to find the optimal boundary in a robust and efficient manner based on the extracted external and internal local costs, thus handling much inexact user boundary definitions than existing methods. Experimental results using MR and CT images show that the proposed algorithm achieves accurate segmentation in medical images without the need for accurate boundary definition as per existing Intelligent Scissors methods. Furthermore, usability testing indicate that the proposed algorithm requires significantly less user interaction than Intelligent Scissors.

}, keywords = {Algorithms, Artificial Intelligence, Automated, Computer Simulation, Computer-Assisted, Diagnostic Imaging, Humans, image enhancement, image interpretation, Information Storage and Retrieval, Markov Chains, Models, Pattern Recognition, Reproducibility of Results, Statistical, Visible Human Projects}, doi = {http://dx.doi.org/10.1109/IEMBS.2008.4649855}, author = {A Mishra and A Wong and W Zhang and D A. Clausi and P Fieguth} } @article {356, title = {Extended-Hungarian-JPDA: Exact single-frame stem cell tracking}, journal = {IEEE Transactions on Biomedical Engineering}, volume = {54}, year = {2007}, pages = {2011 - 2019}, abstract = {

The fields of bioinformatics and biotechnology rely on the collection, processing and analysis of huge numbers of biocellular images, including cell features such as cell size, shape, and motility. Thus, cell tracking is of crucial importance in the study of cell behaviour and in drug and disease research. Such a multitarget tracking is essentially an assignment problem, NP-hard, with the solution normally found in practice in a reduced hypothesis space. In this paper we introduce a novel approach to find the exact association solution over time for single-frame scan-back stem cell tracking. Our proposed method employs a class of linear programming optimization methods known as the Hungarian method to find the optimal joint probabilistic data association for nonlinear dynamics and non-Gaussian measurements. The proposed method, an optimal joint probabilistic data association approach, has been successfully applied to track hematopoietic stem cells.

}, keywords = {Algorithms, Animals, biocellular images, bioinformatics, biological techniques, biotechnology, cell motility, cell shape, cell size, Cells, cellular biophysics, Computer-Assisted, Data Interpretation, extended-Hungarian-joint probabilistic data association, hematopoietic stem cells, Humans, image enhancement, image interpretation, linear programming optimization methods, Microscopy, multitarget tracking, nonGaussian measurements, nonlinear dynamics, optimal joint probabilistic data association, principal component analysis, Reproducibility of Results, Sensitivity and Specificity, single-frame scan-back stem cell tracking, Statistical, Video}, issn = {0018-9294}, doi = {http://dx.doi.org/10.1109/TBME.2007.895747}, author = {N Nezamoddin Kachouie and P Fieguth} } @article {415, title = {Design-based texture feature fusion using Gabor filters and co-occurrence probabilities}, volume = {14}, year = {2005}, pages = {925 - 936}, abstract = {

A design-based method to fuse Gabor filter and grey level co-occurrence probability (GLCP) features for improved texture recognition is presented. The fused feature set utilizes both the Gabor filter\&$\#$39;s capability of accurately capturing lower and mid-frequency texture information and the GLCP\&$\#$39;s capability in texture information relevant to higher frequency components. Evaluation methods include comparing feature space separability and comparing image segmentation classification rates. The fused feature sets are demonstrated to produce higher feature space separations, as well as higher segmentation accuracies relative to the individual feature sets. Fused feature sets also outperform individual feature sets for noisy images, across different noise magnitudes. The curse of dimensionality is demonstrated not to affect segmentation using the proposed the 48-dimensional fused feature set. Gabor magnitude responses produce higher segmentation accuracies than linearly normalized Gabor magnitude responses. Feature reduction using principal component analysis is acceptable for maintaining the segmentation performance, but feature reduction using the feature contrast method dramatically reduced the segmentation accuracy. Overall, the designed fused feature set is advocated as a means for improving texture segmentation performance.

}, keywords = {Algorithms, Artificial Intelligence, Automated, Computer Simulation, Computer-Assisted, design-based texture feature fusion, feature contrast, feature reduction, Gabor filter, grey level cooccurrence probability, image classification, image enhancement, image interpretation, image segmentation, image segmentation classification, image texture, Information Storage and Retrieval, Models, Pattern Recognition, principal component analysis, probability, Statistical, Subtraction Technique, texture recognition}, issn = {1057-7149}, doi = {http://dx.doi.org/10.1109/TIP.2005.849319}, author = {D A. Clausi and H Deng} } @article {418, title = {Statistical processing of large image sequences}, journal = {IEEE Transactions on Image Processing}, volume = {14}, year = {2005}, pages = {80 - 93}, abstract = {

The dynamic estimation of large-scale stochastic image sequences, as frequently encountered in remote sensing, is important in a variety of scientific applications. However, the size of such images makes conventional dynamic estimation methods, for example, the Kalman and related filters, impractical. We present an approach that emulates the Kalman filter, but with considerably reduced computational and storage requirements. Our approach is illustrated in the context of a 512 times; 512 image sequence of ocean surface temperature. The static estimation step, the primary contribution here, uses a mixture of stationary models to accurately mimic the effect of a nonstationary prior, simplifying both computational complexity and modeling. Our approach provides an efficient, stable, positive-definite model which is consistent with the given correlation structure. Thus, the methods of this paper may find application in modeling and single-frame estimation.

}, keywords = {Algorithms, Artificial Intelligence, Automated, Biological, Cluster Analysis, computational complexity, Computer Graphics, Computer Simulation, Computer-Assisted, correlation methods, correlation structure, dynamic estimation method, image enhancement, image interpretation, image sequences, Imaging, Information Storage and Retrieval, Kalman filter, Kalman filters, large-scale stochastic image sequence estimation, Models, Movement, Numerical Analysis, ocean surface temperature, Pattern Recognition, Remote Sensing, Reproducibility of Results, Sensitivity and Specificity, Signal Processing, single-frame estimation, static estimation step, Statistical, statistical analysis, statistical image processing, stochastic processes, Subtraction Technique, Three-Dimensional, Video Recording}, issn = {1057-7149}, doi = {http://dx.doi.org/10.1109/TIP.2004.838703}, author = {F M. Khellah and P Fieguth and M J. Murray and M R. Allen} } @article {690, title = {Gaussian MRF rotation-invariant features for image classification}, journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, volume = {26}, year = {2004}, pages = {951 - 955}, abstract = {

Features based on Markov random field (MRF) models are sensitive to texture rotation. This paper develops an anisotropic circular Gaussian MRF (ACGMRF) model for retrieving rotation-invariant texture features. To overcome the singularity problem of the least squares estimate method, an approximate least squares estimate method is designed and implemented. Rotation-invariant features are obtained from the ACGMRF model parameters using the discrete Fourier transform. The ACGMRF model is demonstrated to be a statistical improvement over three published methods. The three methods include a Laplacian pyramid, an isotropic circular GMRF (ICGMRF), and gray level cooccurrence probability features.

}, keywords = {Algorithms, anisotropic circular Gaussian MRF model, Artificial Intelligence, Automated, Computer Simulation, Computer-Assisted, discrete Fourier transform, discrete Fourier transforms, Gaussian MRF rotation-invariant features, gray level cooccurrence probability features, image classification, image enhancement, image interpretation, image texture, Laplacian pyramid, Markov Chains, Markov processes, Markov Random Field models, Models, Normal Distribution, Pattern Recognition, Rotation, rotation-invariant texture features, Statistical, statistical improvement, texture rotation}, issn = {0162-8828}, doi = {http://dx.doi.org/10.1109/TPAMI.2004.30}, author = {H Deng and D A. Clausi} }