Publications

Tran, N. ., Rahman, M. ., He, L. ., Xin, L. ., Shan, B. ., & Li, M. . (2016). Complete de novo assembly of monoclonal antibody sequences. Nature, Scientific Reports 6, doi:10.1038 Srep31730.

Kari, L. ., Konstantinidis, S. ., Kopecki, S. ., & Solis-Reyes, S. . (2016). Additive methods for genomic signatures. BMC Bioinformatics, 17:313. Retrieved from https://cs.uwaterloo.ca/~lila/pdfs/additive_final.pdf

Lobb, B. ., & Doxey, A. . (2016). Novel function discovery through sequence and structural data mining. Current Opinion in Structural Biology. 38:53-61.

Yang, L. ., Ibrahim, A. ., Johnston, C. ., Skinnider, M. ., Ma, B. ., & Magarvey, N. . (2015). Exploration of Nonribosomal Peptide Families with an Automated Informatic Search Algorithm. Chemistry & Biology 22 (9), 1259-1269.

Ma, B. . (2015). Novor: Real-Time Peptide de Novo Sequencing Software. Journal of American Society of Mass Spectrometry 26 (11), 1885-1894.

Doxey, A. ., Kurtz, D. ., Sauder, L. ., Lynch, M. ., & Neufeld, J. . (2015). Aquatic metagenomes implicate Thaumarchaeaota in global cobalamin production. ISME Journal. 9:461-71.

Mansfield, M. ., Adams, J. ., & Doxey, A. . (2015). Botulinum neurotoxin homologs in non-Clostridium species. FEBS Letters. 589:342-8.

Kari, L. ., Hill, K. ., Sayem, A. ., Karamichalis, R. ., Bryans, N. ., Davis, K. ., & Dattani, N. . (2015). Mapping the space of genomic signatures. PLOS ONE 10(5): e0119815. doi:10.1371 journal.Pone.0119815. Retrieved from https://cs.uwaterloo.ca/~lila/pdfs/Space_of_Genomic_Signatures.pdf

Marinier, E. ., Brown, D. ., & McConkey, B. . (2015). Pollux: platform-independent error correction of single and mixed genomes. BMC Bioinformatics 16:10.

Karamichalis, R. ., Kari, L. ., Konstantinidis, S. ., & Kopecki, S. . (2015). An investigation into inter- and intragenomic variations of graphic genomic signatures. BMC Bioinformatics, 16:246. Retrieved from https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0655-4