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Brown, D. ., & Truszkowski, J. . (2013). Fast error-tolerant quartet phylogeny algorithms. Theoretical Computer Science 483: 104-114.

Cui, X. ., Li, S. ., Bu, D. ., & Li, M. . (2013). Towards reliable automatic protein structure alignment. WABI 2013 Sept. 2-4, Sophia Antipolis, France, Pp. 18-32. Presented at the.

Meshram, M. ., Naderi, S. ., McConkey, B. ., Ingalls, B. ., Scharer, J. ., & Budman, H. . (2013). Modeling the coupled extracellular and intracellular environments in mammalian cell culture. Metabolic Engineering, 19:57-68.

Alipanahi, B. ., Krislock, N. ., Wolkowicz, H. ., Ghodsi, A. ., Donaldson, L. ., & Li, M. . (2013). Determining protein structures from NOESY distance constraints by semidefinite programming. J. Computat. Biol., 20:4 296-310.

Cui, X. ., Li, S. ., Bu, D. ., & Li, M. . (2013). Towards reliable automatic protein structure alignment. Nucleic Acids Research, 37:12, 1-7.

Alhaider, A. ., Abdelgader, A. ., Turjoman, A. ., Newell, K. ., Hunsucker, S. ., Shan, B. ., Ma, B. ., Gibson, D. ., & Duncan, M. . (2013). Through the Eye of an Electrospray Needle: Mass Spectrometric Identification of the Major Peptides & Proteins in the Milk of the One Humped Camel (Camelus dromedarius). Journal of Mass Spectrometry. 48 (7), 779-794.

He, L. ., Han, X. ., & Ma, B. . (2013). De Novo Sequencing with Limited Number of Post-Translational Modifications per Peptide. Journal of Bioinformatics and Computational Biology 11(4).

Guturu, H. ., Doxey, A. ., Wenger, A. ., & Bejerano, G. . (2013). Structure-aided prediction of transcription factor complexes in conserved non-coding elements. Philosophical Transactions of the Royal Society B. 368:20130029. Co-First Authors.

Holtby, D. ., Li, S. ., & Li, M. . (2013). LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins J. Computat. Biol., 20:3, 212-223.