Holtby, D. ., Li, S. ., & Li, M. . (2012). LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins.
Publications
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Chen, Z. ., Ma, B. ., & Wang, L. . (2012). A Three-String Approach to the Closest String Problem. Journal of Computer and System Sciences 78(1): 164-178.
Bottger, A. ., Doxey, A. ., Hess, M. ., Pfaller, K. ., Salvenmoser, W. ., Deutzmann, R. ., Geissner, A. ., Pauly, B. ., Altstatter, J. ., Munder, S. ., Heim, A. ., Gabius, H. ., McConkey, B. ., & David, C. . (2012). Horizontal gene transfer contributed to the evolution of extracellular surface structures, the freshwater polyp Hydra is covered by a complex fibrous cuticle containing glycosaminoglycans and proteins of the PPOD and SWT (sweet tooth) families. PLoS One,7:E52278.
Stearns, J. ., Woody, O. ., McConkey, B. ., & Glick, B. . (2012). Effects of bacterial ACC deaminase on Brassica napus gene expression. Molecular Plant-Microbe Interactions, 25:668-676.
Ibrahima, A. ., Yang, L. ., Johnstonc, C. ., Liu, X. ., Ma, B. ., & Magarvey, N. . (2012). Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery. PNAS 109:19196-19201.
Cheng, Z. ., Woody, O. ., McConkey, B. ., & Glick, B. . (2012). Combined effects of the plant growth-promoting bacterium Pseudomonas putida UW4 and salinity stress on the Brassica napus proteome. Applied Soil Ecology,61:255-263.
Broom, A. ., Doxey, A. ., Lobsanov, Y. ., Berthin, L. ., Rose, D. ., Howell, P. ., McConkey, B. ., & Meiering, E. . (2012). Modular evolution and the origins of symmetry, reconstruction of a three-fold symmetric globular protein. Structure 20:161-171.
Sun, S. ., Yang, F. ., Yang, Q. ., Zhang, H. ., Wang, Y. ., Bu, D. ., & Ma, B. . (2012). MS-Simulator: Predicting Y-Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions. Journal of Proteome Research. DOI: 10.1021 Pr300235v.
Li, W. ., Ma, B. ., & Zhang, K. . (2012). Efficient Filtration for Similarity Search with Spaced k-mer Neighbors.
Cui, X. ., Li, S. ., Bu, D. ., Alipanahi, B. ., & Li, M. . (2012). How accurately can we model protein structures with dihedral angles?.