Publications

Ibrahima, A. ., Yang, L. ., Johnstonc, C. ., Liu, X. ., Ma, B. ., & Magarvey, N. . (2012). Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery. PNAS 109:19196-19201.

Cheng, Z. ., Woody, O. ., McConkey, B. ., & Glick, B. . (2012). Combined effects of the plant growth-promoting bacterium Pseudomonas putida UW4 and salinity stress on the Brassica napus proteome. Applied Soil Ecology,61:255-263.

Broom, A. ., Doxey, A. ., Lobsanov, Y. ., Berthin, L. ., Rose, D. ., Howell, P. ., McConkey, B. ., & Meiering, E. . (2012). Modular evolution and the origins of symmetry, reconstruction of a three-fold symmetric globular protein. Structure 20:161-171.

Sun, S. ., Yang, F. ., Yang, Q. ., Zhang, H. ., Wang, Y. ., Bu, D. ., & Ma, B. . (2012). MS-Simulator: Predicting Y-Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions. Journal of Proteome Research. DOI: 10.1021 Pr300235v.

Li, W. ., Ma, B. ., & Zhang, K. . (2012). Efficient Filtration for Similarity Search with Spaced k-mer Neighbors.

Cui, X. ., Li, S. ., Bu, D. ., Alipanahi, B. ., & Li, M. . (2012). How accurately can we model protein structures with dihedral angles?.

Woody, O. ., & McConkey, B. . (2011). Detection and analysis of functional specialization in duplicated genes. Gene Duplication, 37-58.

Kim, D. ., Gidvani, R. ., Ingalls, B. ., Duncker, B. ., & McConkey, B. . (2011). Differential chromatin proteomics of the MMS-induced DNA damage response in yeast. Proteome Science, 9:62.

Bu, F. ., Zhu, X. ., & Li, M. . (2011). A New Multiword Expression Metric and Its Applications. J. Comput. Sci. Tech.,26:1, 3-13.

Li, S. ., Bu, D. ., & Li, M. . (2011). Residues with similar hexagon neighborhoods share similar side-chain conformations. ACM/IEEE/Trans./Comput./Biology/Bioinfo./9:1,/240-248.