Comparison of Gaussian filter versus wavelet-based denoising on graph-based segmentation of retinal OCT images

TitleComparison of Gaussian filter versus wavelet-based denoising on graph-based segmentation of retinal OCT images
Publication TypeConference Paper
Year of Publication2018
AuthorsRoy, P., M. Parthasarathy, J. Zelek, and V. Lakshminarayanan
Conference NameProgress in Biomedical Optics and Imaging - Proceedings of SPIE; Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging
Date Published03/2018
KeywordsAutomated segmentation, Coherent light, Gaussian distribution, graph theory, Graph-based segmentation, Graphic methods, image denoising, Image processing, Image reconstruction, Image segmentation, intraretinal layers, layer segmentation, Low pass filters, low-pass filter, Medical applications, Molecular imaging, Nonlinear filtering, Ophthalmology, Optical data processing, Optical tomography, Pulse shaping circuits, Retinal SD-OCT, Segmentation algorithms, Spectral domain optical coherence tomographies, Wavelet analysis, wavelet reconstruction
Abstract

Accurate segmentation of spectral-domain Optical Coherence Tomography (SD-OCT) images helps diagnose retinal pathologies and facilitates the study of their progression/remission. Manual segmentation is clinical-expertise dependent and highly time-consuming. Furthermore, poor image contrast due to high-reflectivity of some retinal layers and the presence of heavy speckle noise, pose severe challenges to the automated segmentation algorithms. The first step towards retinal OCT segmentation therefore, is to create a noise-free image with edge details still preserved, as achieved by image reconstruction on a wavelet-domain preceded by bilateral-filtering. In this context, the current study compares the effects of image denoising using a simple Gaussian-filter to that of wavelet-based denoising, in order to help investigators decide whether an advanced denoising technique is necessary for accurate graph-based intraretinal layer segmentation. A comparative statistical analysis conducted between the mean thicknesses of the six layers segmented by the algorithm and those reported in a previous study, reports non-significant differences for five of the layers (p > 0.05) except for one layer (p = 0.04), when denoised using Gaussian-filter. Non-significant layer thickness differences are seen between both the algorithms for all the six retinal layers (p > 0.05) when bilateral-filtering and wavelet-based denoising is implemented before boundary delineation. However, this minor improvement in accuracy is achieved at an expense of substantial increase in computation time (∼10s when run on a specific CPU) and logical complexity. Therefore, it is debatable if one should opt for advanced denoising techniques over a simple Gaussian-filter when implementing graph-based OCT segmentation algorithms. © 2018 SPIE.

DOI10.1117/12.2292479