The current plethora of imaging technologies such as magnetic resonance imaging (MR), computed tomography (CT), position emission tomography (PET), optical coherence tomography (OCT), and ultrasound provide great insight into the different anatomical and functional processes of the human body. While such imaging technologies have improved significantly over the years to provide improved resolution and signal-to-noise ratio (SNR), as well as reduced acquisition speed, there are still many fundamental trade-offs between these three aspects due to operational, financial, and physical constraints. As such, the acquired data can be largely unusable in raw form due to factors such as noise, technology-related artifacts, poor resolution, and contrast. Furthermore, given the complexities of biomedical imaging data, it is often difficult for research scientists and clinicians to interpret and analyze the acquired data in a meaningful and efficient fashion. Researchers in the VIP group are developing novel and exciting ways to address the issues associated with biomedical imaging to assist clinicians, radiologists, pathologists, and clinical research scientists in better visualizing, diagnosing, and understanding various diseases affecting the human body.
Related people
Directors
Alexander Wong, David A. Clausi, Paul Fieguth
Students
Robert Amelard, Keyvan Kasiri, Daniel S. Cho, Andre Carrington, Ameneh Boroomand, Farnoud Kazemzadeh, Shahid Haider, M. Javad Shafiee, Jiange Grace Liu, Shelley Wang, Devinder Kumar, Edward Li, Audrey Chung, Brendan Chwyl,Jason Deglint
Alumni
Akshaya Mishra, Ed Jernigan, Justin Eichel, Nezam Kachouie, Peter Iles, Shimon Schwartz, Wen Zhang, Shannon Puddister, Jeffrey Glaister, Shiva Zaboli, Chenyi Liu, Andrew Cameron, Dorothy Lui, Christian Scharfenberger, Zohreh Azimifar
Related demos
Bias Field Correction in Endorectal Diffusion Imaging
Enhanced Low-dose Computed Tomography
Multiplexed Optical High-coherence Interferometry
Related publications
Journal articles
Haider, S., A. Cameron, P. Siva, D. Lui, M. J. Shafiee, A. Boroomand, N. Haider, and A. Wong, "Fluorescence microscopy image noise reduction using a stochastically-connected random field model", Nature Scientific Reports, Submitted. Details
Boroomand, A., A. Wong, E. Li, D. Cho, B. Ni, and K. Bizheva, "Multi-penalty conditional random field approach to super-resolved reconstruction of optical coherence tomography images", Biomedical Optics Express, Accepted.Details
Liu, C., A. Wong, A. A. Moayed, P. Fieguth, H. Bie, and K. Bizheva, "Automatic tracking of pupillary dynamics from in-vivo functional optical coherence tomography images", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Accepted. Details
Cho, D., A. Wong, D. A. Clausi, J. Callaghan, and J. Yates, "Markov-Chain Monte Carlo based Image Reconstruction for Streak Artifact Reduction on Contrast Enhanced Computed Tomography", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Accepted. Details
Wong, A., and J. Scharcanski, "Monte Carlo Despeckling of Transrectal Ultrasound (TRUS) Images of the Prostate",Digital Signal Processing, Accepted. Details
Glaister, J., A. Wong, and D. A. Clausi, "Automatic segmentation of skin lesions from dermatological photographs using a joint probabilistic texture distinctiveness approach", IEEE Transactions on Biomedical Engineering, Accepted. Details
Amelard, R., C. Scharfenberger, F. Kazemzadeh, K. J. Pfisterer, B. S. Lin, A. Wong, and D. A. Clausi, "Non-contact transmittance photoplethysmographic imaging (PPGI) for long-distance cardiovascular monitoring", Nature Scientific Reports, vol. 6, no. 5, October, 2015. Details
Amelard, R., J. Glaister, A. Wong, and D. A. Clausi, "High-level intuitive features (HLIFs) for intuitive skin lesion description
", IEEE Transactions on Biomedical Engineering, vol. 62, issue 3, pp. 820-831, October, 2015.Details
Shafiee, M. J., S. Haider, A. Wong, D. Lui, A. Cameron, A. Modhafar, P. Fieguth, and M. A. Haider, "Apparent Ultra-High b-value Diffusion-Weighted Image Reconstruction via Hidden Conditional Random Fields", TRANSACTIONS ON MEDICAL IMAGING, vol. 34, no. 5: IEEE, 2015. Details
Lui, D., A. Cameron, A. Modhafar, D. Cho, and A. Wong, "Low-dose computed tomography via Spatially-adaptive Monte Carlo reconstruction", Computerized Medical Imaging and Graphics, vol. 37, issue 7-8, pp. 438 - 449, October, 2013. Details
Cameron, A., D. Lui, A. Boroomand, J. Glaister, A. Wong, and K. Bizheva, "Stochastic speckle noise compensation in optical coherence tomography using non-stationary spline-based speckle noise modelling", Biomedical Optics Express, vol. 4, no. 9, August, 2013. Details
Lui, D., A. Modhafar, J. Glaister, A. Wong, and M. A. Haider, "Monte Carlo Bias Field Correction in Endorectal Diffusion Imaging", IEEE Transactions on Biomedical Engineering, vol. 61, issue 2, pp. 368 - 380, August, 2013. Details
Wong, A., J. Glaister, A. Cameron, and M. A. Haider, "Correlated Diffusion Imaging", BMC Medical Imaging, 2013.Details
Wong, A., K. Gallagher, and J. Callaghan, "Computerized System for Measurement of Muscle Thickness Based on Ultrasonography", Computer Methods in Biomechanics and Biomedical Engineering, 2013. Details
Glaister, J., R. Amelard, A. Wong, and D. A. Clausi, "MSIM: Multi-Stage Illumination Modeling of Dermatological Photographs for Illumination-Corrected Skin Lesion Analysis", IEEE Transactions on Biomedical Engineering, vol. 60, issue 7, pp. 1873 - 1883, November, 2013. Details
Wong, A., A. Mishra, P. Fieguth, and D. A. Clausi, "Sparse reconstruction of breast MRI using homotopic L0 minimization in a regional sparsified domain", IEEE Transactions on Biomedical Engineering, vol. 60, no. 3, pp. 743 - 52, 2013. Details
Schwartz, S., C. Liu, A. Wong, D. A. Clausi, P. Fieguth, and K. Bizheva, "Energy-guided learning approach to compressive FD-OCT", Optics Express, vol. 21, issue 1, pp. 329-344, 2013. Details
Liu, C., A. Wong, K. Bizheva, P. Fieguth, and H. Bie, "Homotopic, non-local sparse reconstruction of optical coherence tomography imagery", Optics Express, vol. 20, no. 9, pp. 10200-10211, April, 2012. Details
Schwartz, S., A. Wong, and D. A. Clausi, "Compressive fluorescence microscopy using saliency-guided sparse reconstruction ensemble fusion", Optics Express, vol. 20, issue 16, pp. 17281–17296, July, 2012. Details
Karimi, A., A. Wong, and K. Bizheva, "Automated detection and cell density assessment of keratocytes in the human corneal stroma from ultrahigh resolution optical coherence tomograms", Biomedical Optics Express, 2012. Details
Wong, A., S. Hariri, and K. Bizheva, "Tensor total variation approach to optical coherence tomography reconstruction",Biomedical Optics Express, 2012. Details
Moayed, A. A., S. Hariri, C. Liu, A. Wong, V. Choh, and K. Bizheva, "Stimulus Specific Pupil Dynamics Measured In-vivo in Birds (Gallus Gallus Domesticus) with Ultrahigh Resolution Optical Coherence Tomography", Investigative Ophthalmology and Visual Science, 11, vol. 53, issue 6869, 2012. Details
Wong, A., E. Irving, R. Genest, V. Choh, and N. Chandrashekar, "Automatic three-dimensional reconstruction of the chick eye based on high resolution photographic images", Computer Methods in Biomechanics and Biomedical Engineering, 2011. Details
Zhang, W., A. Wong, A. Mishra, P. Fieguth, and D. A. Clausi, "Efficient globally optimal registration of remote sensing imagery via quasi-random scale-space structural correlation energy functional", IEEE Geoscience and Remote Sensing Letters, vol. 8, issue 5, pp. 997-1001, 2011. Details
Wong, A., J. Scharcanski, and P. Fieguth, "Automatic skin lesion segmentation via iterative stochastic region merging", IEEE Transactions on Information Technology in Biomedicine, vol. 15, issue 6, pp. 929 - 936, 2011. Details
Wong, A., and J. Scharcanski, "Dynamic Fisher-Tippett Region Merging Approach to Transrectal Ultrasound Prostate Lesion Segmentation", IEEE Transactions on Information Technology in BioMedicine, 2011. Details
Esteghamatian, M., Z. Azimifar, P. Radau, and G. Wright, "Real time cardiac image registration during respiration: a time series prediction approach", Journal of Real-time Image Processing: Springer, 2011. Details
Kachouie, N. Nezamoddin, P. Fieguth, and E. Jervis, "A probabilistic cell model in background corrected image sequences for single cell analysis", BioMedical Engineering OnLine, vol. 9, no. 1, pp. 57, 2010. Details
Kachouie, N. Nezamoddin, Z. Ezziane, P. Fieguth, E. Jervis, D. Gamble, and A. Khademhosseini, "Constrained watershed method to infer morphology of mammalian cells in microscopic images", Cytometry Part A, vol. 77A, no. 12, pp. 1148–1159, 2010. Details
Wong, A., and J. Scharcanski, "Phase-adaptive superresolution of mammographic images using complex wavelets",IEEE Transactions on Image Processing, vol. 18, no. 15, pp. 1140–1146, 2010. Details
Wong, A., "An adaptive Monte Carlo approach to phase-based multimodal image registration", IEEE Transactions on Information Technology in Biomedicine, vol. 14, pp. 173 - 179, 2010. Details
Koff, D., J. Scharcanski, L. da Silva, and A. Wong, "Interactive modeling and evaluation of tumor growth", Journal of Digital Imaging, vol. 23, pp. 755 - 768, 2010. Details
Wong, A., D. A. Clausi, and P. Fieguth, "CPOL: Complex phase order likelihood as a similarity measure for MR-CT registration", Medical Image Analysis, vol. 14, no. 1, pp. 50 - 57, 2010. Details
Wong, A., A. Mishra, K. Bizheva, and D. A. Clausi, "General Bayesian estimation for speckle noise reduction in optical coherence tomography retinal imagery", Optics Express, vol. 18, no. 8, pp. 8338–8352, 2010. Details
Siva, P., G. W. Brodland, and D. A. Clausi, "Detecting mitoses in time-lapse images of embryonic epithelia using intensity analysis", Annals of Biomedical Engineering, vol. 37, no. 12, pp. 2646-2655, 2009. Details
Wong, A., N. M. Dunk, and J. Callaghan, "A systematic approach to feature tracking of lumbar spine vertebrae from fluoroscopic images using complex-valued wavelets", Computer Methods in Biomechanics and Biomedical Engineering, vol. 12, pp. 607 - 616, 2009. Details
Siva, P., G. W. Brodland, and D. A. Clausi, "Detection of mitoses in embryonic epithelia using motion field analysis",Computer Methods in Biomechanics and Biomedical Engineering, vol. 12, no. 2, pp. 151-163, 2009. Details
Wong, A., "Alignment of confocal scanning laser ophthalmoscopy photoreceptor images at different polarizations using complex phase relationships", IEEE Transactions on Biomedical Engineering, vol. 56, no. 7, pp. 1831 - 1837, 2009. Details
Wong, A., A. Mishra, J. Yates, P. Fieguth, D. A. Clausi, and J. Callaghan, "Intervertebral disc segmentation and volumetric reconstruction from peripheral quantitative computed tomography imaging", IEEE Transactions on Biomedical Engineering, vol. 56, no. 11, pp. 2748-2751, 2009. Details
Wong, A., and J. Orchard, "Robust multimodal registration using local phase-coherence representations", Journal of Signal Processing Systems, vol. 54, pp. 89 - 100, 2009. Details
Bizheva, K., A. Mishra, A. Wong, and D. A. Clausi, "Intra-retinal layer segmentation in optical coherence tomography images", Optics Express, vol. 17, no. 26: OSA, pp. 23719–23728, 2009. Details
Wong, A., and W. Bishop, "Efficient least squares fusion of MRI and CT images using a phase congruency model",Pattern Recognition Letters, vol. 29, no. 3, pp. 173 - 180, 2008. Details
Kachouie, N. Nezamoddin, and P. Fieguth, "Extended-Hungarian-JPDA: Exact single-frame stem cell tracking", IEEE Transactions on Biomedical Engineering, vol. 54, no. 11, pp. 2011 - 2019, 2007. Details
Ramunas, J., N. Nezamoddin Kachouie, P. Fieguth, and E. Jervis, "Probabilistic model-based cell tracking",International Journal of Biomedical Imaging, 2006. Details
Fieguth, P., and T. Simpson, "Automated measurement of bulbar redness", IEEE Transactions on Geoscience and Remote Sensing, pp. 1695 - 1708, 2002. Details
Brodland, G. W., and D. A. Clausi, "Embryonic Tissue Morphogenesis Modeled by FEM", Journal of Biomechanical Engineering, vol. 116, no. 2: ASME, pp. 146-155, 1994. Details
Kazemzadeh, F., A. Wong, B. B. Behr, and A. R. Hajian, "Depth Profilometry via Multiplexed Optical High-Coherence Interferometry", PLoS ONE: PLoS. Details
Conference papers
Carrington, A., P. Fieguth, and H. H. Chen, "A New Mercer Sigmoid Kernel for Clinical Data Classification", 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'14), Chicago, U.S.A., IEEE, Accepted. Details
Kasiri, K., P. Fieguth, and D. A. Clausi, "Self-similarity measure for multi-modal image registration", IEEE International Conference on Image Processing (ICIP), Accepted. Details
Kasiri, K., P. Fieguth, and D. A. Clausi, "Sorted self-similarity for multi-modal image registration", International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Accepted. Details
Chwyl, B., A. Chung, A. Wong, and D. A. Clausi, "Specular Reflectance Suppression in Endoscopic Imagery via Stochastic Bayesian Estimation", International Conference on Image Analysis and Recognition 2015, Accepted. Details
Kasiri, K., P. Fieguth, and D. A. Clausi, "Cross modality label fusion in multi-atlas segmentation", IEEE International Conference on Image Processing, 2014. Details
Kasiri, K., H. Sekkati, and D. A. Clausi, "Quality assessment in digital pathology images", Imaging Network Ontario-ImNO, 2016. Details
Chung, A., C. Scharfenberger, F. Khalvati, A. Wong, and M. A. Haider, "Statistical Textural Distinctiveness in Multi-Parametric Prostate MRI for Suspicious Region Detection", International Conference on Image Analysis and Recognition (ICIAR) , July, 2015. Details
Scharfenberger, C., D. Lui, F. Khalvati, A. Wong, and M. A. Haider, "Semi-Automatic Prostate Segmentation via a Hidden Markov Model with Anatomical and Textural Priors", 23rd Annual Meeting of International Society for Magnetic Resonance in Medicine (ISMRM), June, 2015. Details
Chung, A., X. Wang, R. Amelard, C. Scharfenberger, J. Leong, A. Wong, and D. A. Clausi, "High-resolution motion-compensated photoplethysmographic imaging for remote heart rate monitoring", SPIE Photonics West, Multimodal Biomedical Imaging X, February, 2015. Details
Amelard, R., C. Scharfenberger, A. Wong, and D. A. Clausi, "Illumination-compensated non-contact imaging photoplethysmography via dual-mode temporally-coded illumination", SPIE Photonics West, Multimodal Biomedical Imaging X, February, 2015. Details
Amelard, R., C. Scharfenberger, A. Wong, and D. A. Clausi, "Non-contact assessment of melanin distribution via multispectral temporal illumination coding", SPIE Photonics West, Multimodal Biomedical Imaging X, February, 2015. Details
Kumar, D., A. Wong, and D. A. Clausi, "Lung Nodule Classification Using Deep Features in CT Images", 12th Conference on Computer and Robot Vision (CRV), Halifax, NS, Canada, IEEE Xplore, April, 2015. Details
Kasiri, K., P. Fieguth, and D. A. Clausi, "Structural Representations for Multi-modal Image Registration Based on Modified Entropy", International Conference on Image Analysis and Recognition (ICIAR), Accepted. Details
Boroomand, A., B. Tan, A. Wong, and K. Bizheva, "Axial resolution improvement in spectral domain optical coherence tomography using a depth-adaptive maximum-a-posterior framework", SPIE Photonics West (BiOS), San Francisco, USA, 2015. Details
Boroomand, A., M. J. Shafiee, A. Wong, and K. Bizheva, "Lateral resolution enhancement via imbricated spectral domain optical coherence tomography in a maximum-a-posterior reconstruction framework", SPIE Photonics West (BiOS), San Francisco, USA, 2015. Details
Cho, D., S. Haider, R. Amelard, A. Wong, and D. A. Clausi, "Physiological Characterization of Skin Lesion using Non-linear Random Forest Regression Model", 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Sheraton Chicago Hotel and Towers Chicago, IL, USA, pp. 3349-3352, September, 2014. Details
Haider, S., D. Cho, R. Amelard, A. Wong, and D. A. Clausi, "Enhanced classification of malignant melanoma lesions via the integration of physiological features from dermatological photographs", 36th Annual International IEEE Engineering in Medicine and Biology Society Conference, Sheraton Chicago Hotel and Towers Chicago, IL, USA, pp. 6455-6458, September, 2014. Details
Gawish, A., P. Fieguth, S. Marschall, and K. Bizheva, "Undecimated Hierarchical Active Contours for OCT Image Segmentation", IEEE International Conference on Image Processing ICIP, 2014. Details
Khalvati, F., A. Wong, G. Bjarnason, and M. Haider, "A Multi-Parametric Diffusion Magnetic Resonance Imaging Texture Feature Model for Prostate Cancer Analysis", Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014. Details
Cameron, A., A. Modhafar, F. Khalvati, D. Lui, M. J. Shafiee, A. Wong, and M. Haider, "Multiparametric MRI Prostate Cancer Analysis via a Hybrid Morphological-Textural Model", Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014. Details
Kasiri, K., P. Fieguth, and D. A. Clausi, "Cross modality label fusion in multi-atlas segmentation", IEEE International Conference on Image Processing, 2014. Details
Lui, D., C. Scharfenberger, D D. E. Carvalho, J. Callaghan, and A. Wong, "Semi-automatic Fisher-Tippett Guided Active Contour for Lumbar Multifidus Muscle Segmentation", International Conference of the IEEE Engineering in Medicine and Biology Society, 2014. Details
Kasiri, K., D. A. Clausi, and P. Fieguth, "Multi-modal image registration using structural features", 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'14), 2014. Details
Li, E., M. J. Shafiee, A. Chung, F. Khalvati, A. Wong, and M. A. Haider, "Enhanced Reconstruction of Compressive Sensing MRI via Cross-Domain Stochastically Fully-Connected Random Field Model", International Society for Magnetic Resonance in Medicine, February, 2014. Details
Khalvati, F., A. Modhafar, A. Cameron, A. Wong, and M. Haider, "A Multi-Parametric Diffusion Magnetic Resonance Imaging Texture Feature Model for Prostate Cancer Analysis", MICCAI 2014 Workshop on Computational Diffusion MRI, 2014. Details
Carter, K., S. Marschall, A. Gawish, P. Fieguth, L. Sorbara, and K. Bizheva, "Accuracy evaluation of scleral lens thickness and radius of curvature using high-resolution SD- and SS-OCT", SPIE Photonics West, 2014. Details
Kazemzadeh, F., S. Haider, A. Wong, C. Scharfenberger, and D. A. Clausi, "Concurrent Multiview Discrete Spectral Imaging Device from the VIS to the NIR", SPIE: Optics + Photonics, Novel Optical Systems Design and Optimization XVII , vol. 9193, San Diego, USA, SPIE Proceedings, 2014. Details
Liu, C., A. A. Moyed, A. Wong, P. Fieguth, V. Chan, H. Bie, and K. Bizheva, "Automatic algorithm for measuring visually evoked pupil size changes from OCT images ", Ophthalmic Technologies XXIII, SPIE, 2013. Details
Marschall, S., A. Gawish, Y. Feng, L. Sorbara, P. Fieguth, and K. Bizheva, "In-vivo imaging of keratoconic corneas using high-speed high-resolution swept-source OCT", SPIE, vol. 8802, 2013. Details
Amelard, R., A. Wong, and D. A. Clausi, "Extracting Morphological High-Level Intuitive Features (HLIF) for Enhancing Skin Lesion Classification", 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Diego, pp. 4458 - 4461, August, 2012. Details
Amelard, R., A. Wong, and D. A. Clausi, "Extracting High-Level Intuitive Features (HLIF) For Classifying Skin Lesions Using Standard Camera Images", 9th Conference on Computer and Robot Vision, Toronto, pp. 396-403, May, 2012. Details
Schwartz, S., A. Wong, and D. A. Clausi, "Multi-scale saliency-guided compressive sensing approach to efficient robotic laser range measurements", 2012 Ninth Conference on Computer and Robot Vision (CRV), pp. 1-8, May, 2012. Details
Glaister, J., A. Wong, and D. A. Clausi, "Illumination Correction in Dermatological Photographs using Multi-stage Illumination Modeling for Skin Lesion Analysis", 34th Annual International Conference of the IEEE Engineering in Medicine and Biology, pp. 102-105, 2012. Details
Cameron, A., J. Glaister, A. Wong, and M. Haider, "Non-parametric Bayesian Estimation of Apparent Diffusion Coefficient from Diffusion-Weighted Magnetic Resonance Imaging Data", 34th Annual International Conference of the IEEE Engineering in Medicine and Biology, pp. 412-415, 2012. Details
Glaister, J., A. Cameron, A. Wong, and M. Haider, "Quantitative Investigative Analysis of Tumour Separability in the Prostate Gland using Ultra-high b-value Computed Diffusion Imaging", 34th Annual International Conference of the IEEE Engineering in Medicine and Biology, pp. 420-423, 2012. Details
Schwartz, S., A. Wong, and D. A. Clausi, "Saliency-guided compressive fluorescence microscopy", 34th Annual International Conference of the IEEE Engineering in Medicine and Biology, , San Diego, USA., pp. 4365 - 4368 , 2012. Details
Karimi, A., A. Wong, and K. Bizheva, "Automated detection and counting of keratocytes in human corneal stroma from ultrahigh-resolution optical coherence tomograms", SPIE Photonics West (BiOS), 2012. Details
Liu, C., A. Wong, K. Bizheva, P. Fieguth, and H. Bie, "Non-local sparse reconstruction of OCT images", SPIE Photonics West (BiOS), 2012. Details
Bandekar, N., A. Wong, and D. A. Clausi, "A novel approach to automated cell counting for studying human corneal epithelial cells", 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'11), Boston, MA, USA, August, 2011. Details
Wong, A., "Constrained Bayesian streak artifact reduction approach for contrast enhanced computed tomography imaging of the intervertebral disc", Annual International Conference of the IEEE Engineering in Medicine and Biology Society (IEEE EMBC), 2011. Details
Lee, D. D., K. Bizheva, A. Wong, J. A. Eichel, P. Fieguth, and D. A. Clausi, "Despeckling vs averaging of retinal UHROCT tomograms: advantages and limitations", Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XV, vol. 7889, no. 1: SPIE, 2011. Details
Eichel, J. A., D. Lee, A. Wong, P. Fieguth, D. A. Clausi, and K. Bizheva, "Quantitative comparison of despeckling and frame averaging approaches to processing retinal OCT tomograms", SPIE Photonics West (BiOS), 2011. Details
Wong, A., A. Mishra, D. A. Clausi, and P. Fieguth, "Mammogram image superresolution based on statistical moment analysis", 7th Canadian Conference on Computer and Robot Vision, Ottawa, Ontario, Canada, IEEE Computer Society, pp. 339–346, March, 2010. Details
Mishra, A., S. Hariri, A. A. Moayed, K. Bizheva, P. Fieguth, and D. A. Clausi, "A cellular automata based semi-automatic algorithm for segmentation of choroidal blood vessels from ultrahigh resolution optical coherence images of rat retina", 23rd Canadian Conference on Electrical and Computer Engineering (CCECE), Calgary, Alberta, Canada, February, 2010. Details
Eichel, J. A., A. Mishra, D. A. Clausi, P. Fieguth, and K. Bizheva, "A novel algorithm for extraction of the layers of the cornea", 6th Canadian Conference on Computer and Robot Vision, Kelowna, British Columbia, Canada, February, 2009. Details
Bizheva, K., C. Hyun, J. A. Eichel, S. Hariri, A. Mishra, D. A. Clausi, P. Fieguth, T. Simpson, and N. Hutchings,"Evaluation of hypoxic swelling of human cornea with high speed ultrahigh resolution optical coherence tomography", SPIE BIOS (Biomedical Optics), no. 1, San Jose, CA, USA, SPIE, February, 2009. Details
Wong, A., A. Mishra, P. Fieguth, D. A. Clausi, N. M. Dunk, and J. Callaghan, "Shape-guided active contour based segmentation and tracking of lumbar vertebrae in video fluoroscopy using complex wavelets", 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Vancouver, British Columbia, Canada, Aug. 20 - 24, 2008. Details
Kachouie, N. Nezamoddin, and P. Fieguth, "Background estimation for microscopic cellular images", 15th IEEE International Conference on Image Processing, 2008, pp. 3040 - 3043, 2008. Details
Kachouie, N. Nezamoddin, P. Fieguth, and E. Jervis, "Watershed deconvolution for cell segmentation", 30th Annual Conference of the IEEE Engineering in Medicine and Biology Society, pp. 375 - 378, 2008. Details
Siva, P., G. W. Brodland, and D. A. Clausi, "Automated detection of mitosis in embryonic tissues", 4th Annual Canadian Conference on Computer and Robot Vision, Montreal, Quebec, Canada, pp. 97 - 104, February, 2007. Details
Wong, A., and W. Bishop, "Indirect knowledge-based approach to non-rigid multi-modal registration of medical images", 20th Canadian Conference on Electrical and Computer Engineering, pp. 1175 - 1178, 2007. Details
Kachouie, N. Nezamoddin, and P. Fieguth, "A medical texture local binary pattern for TRUS prostate segmentation",29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 5605 - 5608, 2007. Details
Kachouie, N. Nezamoddin, P. Fieguth, and E. Jervis, "Stem-cell localization: a deconvolution problem", 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 5525 - 5528, 2007. Details
Kachouie, N. Nezamoddin, P. Tan, D. Gamble, K. McNagnyl, L. Kelly, M. Hughes, J. Bains, P. Fieguth, J. Wong, and E. Jervis, "Imaging informatics and cell shape analysis: examining the role of NHERF-1 and podocalyxin in uropod formation", Stem Cell Network Annual General Meeting, Toronto, 2007. Details
Ramunas, J., N. Nezamoddin Kachouie, P. Fieguth, and E. Jervis, "A statistical thresholding method for cell tracking", 2006 IEEE International Symposium on Signal Processing and Information Technology, pp. 222 - 227, 2006. Details
Wong, A., and J. Orchard, "Efficient and robust non-rigid least-squares rectification of medical images", 2006 International Conference on Image Processing, Computer Vision, and Pattern Recognition, Las Vegas, Nevada, 2006. Details
Wong, A., W. Bishop, and J. Orchard, "Efficient multi-modal least-squares alignment of medical images using quasi-orientation maps", 2006 International Conference on Image Processing, Computer Vision, and Pattern Recognition, Las Vegas, Nevada, 2006. Details
Kachouie, N. Nezamoddin, P. Fieguth, and S. Rahnamayan, "An elliptical level set method for automatic TRUS prostate image segmentation", IEEE International Symposium on Signal Processing and Information Technology, pp. 191 - 196, 2006. Details
Iles, P., D. A. Clausi, S. Puddister, and G. W. Brodland, "Average cell orientation, shape and size estimated from tissue images", 2nd Annual Canadian Conference on Computer and Robot Vision, Victoria, B.C., Canada, pp. 378 - 385, September, 2005. Details
Quddus, A., P. Fieguth, and O. Basir, "Adaboost and support vector machines for white matter lesion segmentation in MR images", 27th Annual International Conference of the Engineering in Medicine and Biology Society, pp. 463 - 466, 2005. Details
Fieguth, P., and N. Nezamoddin Kachouie, "A model-based hematopoietic stem cell tracker", International Conference on Image Analysis and Recognition, 2005. Details
Ramunas, J., N. Nezamoddin Kachouie, P. Fieguth, and E. Jervis, "A narrow-band level-set method with dynamic velocity for neural stem cell cluster segmentation", International Conference on Image Analysis and Recognition, Toronto, 2005. Details
Kachouie, N. Nezamoddin, L. J. Lee, and P. Fieguth, "A probabilistic living cell segmentation model", International Conference on Image Analysis and Recognition, vol. 1, 2005. Details
Iles, P., D. A. Clausi, and G. W. Brodland, "Estimation of average cell shape from digital images of cellular surfaces",1st Canadian Conference on Computer and Robot Vision, London, Ontario, Canada, pp. 273 - 278, January, 2004. Details
Puddister, S., D. A. Clausi, and G. W. Brodland, "Estimating bulk geometrical properties of cellular structures", 16th International Conference on Vision Interface (VI ’03), Halifax, NS, Canada, pp. 171 - 175, June 11 - 13, 2003. Details
Booth, S., and D. A. Clausi, "Segmentation and three-dimensional reconstruction using MRI vertebral slices", Canadian Conference on Electrical and Computer Engineering, Toronto, ON, Canada, pp. 1303 - 1307, January, 2001. Details
Booth, S., and D. A. Clausi, "Automated segmentation and 3-d reconstruction from spinal MRI", World Congress on Medical Physics and Biomedical Engineering, Chicago, IL, July 28, 2000. Details
Cullen, J., P. Fieguth, S. Pounder, and K. Whitear, "Analysis of corneal images for assessing contact lens trauma",International Conference on Image Processing, vol. 1, Vancouver, 2000. Details
Book chapters
Amelard, R., J. Glaister, A. Wong, and D. A. Clausi, "Melanoma decision support using lighting-corrected intuitive feature models", Computer Vision Techniques for the Diagnosis of Skin Cancer, pp. 193 - 219, October, 2013. Details
Clausi, D. A., and G. W. Brodland, "Finite Element Modeling of Embryo Tissue Formation", Computer Techniques and Computational Methods in Biomechanics, Biomechanical Systems Techniques and Applications, vol. 1: CRC Press, 2001. Details
Patents
Kazemzadeh, F., and A. Wong, A System, Method and Apparatus for Ultra-resolved Ultra-wide Field-of-view Multispectral and Hyperspectral Holographic Microscopy, , vol. 62155416, USA, April 30, 2015. Details
Kazemzadeh, F., A. Wong, and S. Haider, Imaging System and Method for Concurrent Multiview Multispectral Polarimetric Light-field High Dynamic Range Imaging, , USA, 2014. Details
Hajian, A. R., F. Kazemzadeh, B. B. Behr, T. M. Haylock, and L. M. Chifman, A Device and Methods for Generating a Fringe Pattern Based on the Depth of a Surface of a Substance, , USA, 2011. Details
Theses
Eichel, J. A., Statistical Model-Based Corneal Reconstruction, , Waterloo, ON, Canada, University of Waterloo, 2013. Details
Amelard, R., "High-Level Intuitive Features (HLIFs) for Melanoma Detection", Department of Systems Design Engineering, pp. 85, 2013. Details
Glaister, J., "Automatic segmentation of skin lesions from dermatological photographs", Department of Systems Engineering, Waterloo, ON, Canada, University of Waterloo, 2013. Details
Zaboli, S., "Optical Coherence Tomography Image Analysis of Corneal Tissue", Department of Systems Design Engineering, 2012. Details
Kazemzadeh, F., "Laser Interference Fringe Tomography - A Novel 3D Imaging Microscopy Technique", Department of Systems Design Engineering, Waterloo, University of Waterloo, 2011. Details
Kachouie, N. Nezamoddin, "Bayesian Model Based Tracking with Application to Cell Segmentation and Tracking", Department of Systems Design Engineering, Waterloo, Ontario, Canada, University of Waterloo, 2008. Details
Iles, P., "Average Cell Orientation, Eccentricity, and Size from Tissue Images", Department of Systems Design Engineering, Waterloo, Ontario, Canada, University of Waterloo, 2005. Details
Clausi, D. A., "Finite Element Simulation of Early Embryonic Development", Department of Systems Design Engineering, Waterloo, Ontario, Canada, University of Waterloo, 1992. Details
