Contacts
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Dan Brown
Professor, Cheriton School of Computer Science
Lila Kari
Professor, University Research Chair, Cheriton School of Computer Science
Ming Li
Professor Emeritus / Adjunct Professor
Degrees
- Ph.D., Cornell University, United States (1985)
- M.Sc., Cornell University, United States (1983)
- M.Sc., Wayne State University, United States (1980)
Research interests
- Recently I am working on methods for personalized cancer immunotherapy. A key issue for personalized cancer immunotherapy is to discover neoantigens on the surface of cancer cells. We are developing automatic, highly sensitive and personalized methods to sequence those peptides and validate their immunogenicity.
Publications
Bin Ma
Professor, University Research Chair, Cheriton School of Computer Science
Ian Munro
Distinguished Professor Emeritus / Adjunct Professor
Feature article
University Professor Ian Munro’s Golden Jubilee — 50 years at the University of Waterloo
Degrees
- PhD, Computer Science, University of Toronto
- MSc, University of British Columbia
- BA, University of New Brunswick
Research interests
- Data structures, particularly fast and space-efficient structures
- Design, analysis and implementation of algorithms
- Database systems and data warehousing, particularly efficiency issues
Publications
Ziqi Zhang
Assistant Professor, Cheriton School of Computer Science
Degrees
- PhD in Computational Science and Engineering, Georgia Institute of Technology, USA (2025)
- MSc in Computational Science and Engineering, Georgia Institute of Technology, USA (2023)
- Bachelor of Electronic and Information Engineering, Beihang University, Beijing, China (2019)
Research interests
- Machine learning
- Computational biology
- Single-cell sequencing data
- Algorithms for high-throughput multi-omics biological data
Research description
Professor Zhang’s research lies at the intersection of machine learning and computational biology, with a focus on developing methods for large-scale single-cell sequencing data. He studies representation learning across modalities and conditions, predictive modeling of cellular responses to perturbations, gene regulatory and cellular interaction network inference to uncover functional mechanisms, and the development of single-cell foundation models pretrained on large biological atlases. His long-term goal is to build interpretable computational models that capture biological heterogeneity and enable clinically relevant prediction at the patient level.