DSG researchers use technology-assisted review to find effective treatments and procedures to mitigate COVID-19

Monday, May 11, 2020

Since the COVID-19 pandemic began, researchers and clinicians have rushed to understand the available treatments and procedures to mitigate this rapidly growing threat to human health. The sheer volume of studies published on COVID-19 — in countries spanning the globe — as well as lessons learned from prior epidemics and pandemics, simply cannot be gathered and assessed quickly enough using traditional manual methods during this time of crisis.

The urgency of the COVID-19 pandemic has necessitated a transformation in interdisciplinary collaboration, as well as in the process for completing systematic reviews for evidence-based medicine, so that reviews that used to take researchers many months to complete can now accomplished in a matter of days or weeks.

photo of Professor Maura R. Grossman and Gordon V. Cormack

Maura R. Grossman is a Research Professor in the Data Systems Group, Director of Women in Computer Science at the Cheriton School of Computer Science, and an Adjunct Professor at Osgoode Hall Law School, as well as an eDiscovery attorney and consultant in Buffalo, New York.

Gordon V. Cormack is a Professor in the Data Systems Group at the Cheriton School of Computer Science. His primary research focus is on high-stakes information retrieval.

To guide decisions by healthcare providers on the frontlines of the healthcare crisis, Cheriton School of Computer Science Professors Maura R. Grossman and Gordon V. Cormack have been working with the knowledge synthesis team at St. Michael’s Hospital in Toronto, on behalf of the Canadian Frailty Network and Health Canada, to automate these literature searches.

The goal of their efforts is to help the team to quickly identify clinical studies that have evaluated the effectiveness and safety of various measures to keep nursing care facilities safe, as well as treatments for patients with COVID-19. The results of these systematic reviews are then used to support treatment and policy decisions. Importantly, new evidence must be interpreted in light of the lessons learned from studies conducted during previous epidemics and pandemics, such as Severe Acute Respiratory Syndrome (SARS), which caused a disease outbreak beginning in 2002, and Middle East Respiratory Syndrome (MERS), which caused a disease outbreak beginning in 2012.

Using Continuous Active Learning (CAL) Technology-Assisted Review (TAR) — a supervised machine learning approach that Professors Grossman and Cormack originally developed to expedite the review of documents in high-stakes legal cases — they have now applied this same method to automate literature searches in massive databases containing health-related studies for systematic reviews.

Systematic reviews use formal explicit methods — in other words, pre-specifications — that set forth precisely what question is to be answered, how evidence is to be searched for and assessed, and how the information will be synthesized to reach a conclusion. Conducting a systematic review involves multiple processes typically requiring many tedious steps and numerous hours of expert labour. An average systematic review can take a team of researchers a year or more to produce. In this time of emergency, Professors Grossman and Cormack and the St. Michael’s researchers have combined AI technology with a larger review team to produce systematic reviews in about two weeks.

“Our CAL tool identifies for screening the abstracts or studies most likely to meet the specific inclusion criteria, based on studies that have previously been identified and meet the inclusion criteria,” Professor Cormack explained. “This process continues iteratively until none of the identified studies appear to meet the inclusion criteria.” Medical researchers then review the studies identified by the CAL tool for inclusion or exclusion. “CAL is able to identify potential studies for inclusion more quickly and more accurately than traditional methods,” noted Professor Cormack.

“Searching and finding studies for systematic reviews has traditionally been a time-consuming and laborious process that uses keyword search, followed by manual screening of abstracts, and finally full papers,” Professor Grossman added. “We are instead training a machine learning algorithm to perform the initial steps in this task. We use the trained algorithm to search multiple, massive medical and scientific databases, in different languages, in real-time, as they are updated. We then send to the research team at St. Michael’s the papers they need to consider for inclusion in their systematic reviews. Our goal is to find as many as we can, as quickly as we can, so that researchers, clinicians, and public health officials can quickly draw sound conclusions about the treatments and other procedures that are likely to be the most promising, and to dismiss those that are not.”

  1. 2020 (6)
    1. June (1)
    2. May (2)
    3. April (1)
    4. February (1)
    5. January (1)
  2. 2019 (3)
    1. July (1)
    2. March (1)
    3. February (1)
  3. 2018 (16)
    1. October (1)
    2. September (3)
    3. August (1)
    4. July (1)
    5. June (1)
    6. May (3)
    7. April (2)
    8. March (4)
  4. 2017 (11)
  5. 2016 (2)