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pdpp is a Python package that facilitates best practices for reproducible research.

Nate is a Python package designed to facilitate research at the intersection of social network analysis / network science and applied natural language processing. It scales efficiently for large and complex datasets. Nate offers functionality for seamlessly connecting state-of-the-art machine learning models used in natural language processing workflows using spaCy with network analysis workflows using packages such as networkx, igraph, and graph-tool. Nate has carefully-designed data structures that connect these two types of research workflows, and offers a set of tools for quickly producing descriptive reports and visualizations.

metaknowledge is a full-featured Python package for doing computational research on science and knowledge. It was designed and developed by John McLevey and Reid McIlroy-Young. Jillian Anderson, Tyler Crick, and Rachel Wood have also contributed and to varying degrees are involved in maintaining the package.