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Bansal, N. ., Lewenstein, M. ., Ma, B. ., & Zhang, K. . (2010). On the Longest Common Rigid Subsequence Problem. Algorithmica 56(2): 270-280.

Liu, X. ., Xin, L. ., Shan, B. ., & Ma, B. . (2010). Better Score Function for Peptide Identification with ETD MS/MS Spectra. BMC Bioinformatics. 11 (Suppl 1): S4.

Cheng, Z. ., McConkey, B. ., & Glick, B. . (2010). Proteomic studies of plant-bacterial interactions. Soil Biology and Biochemistry, 42:1673-1684.

Brown, D. ., & Golod, D. . (2010). Decoding HMMs using the k best paths: algorithms and applications. BMC Bioinformatics 11 (Suppl 1): S28.

Zhang, Z. ., Lin, H. ., & Ma, B. . (2010). ZOOM Lite: Next-generation Sequencing Data Mapping and Visualization Software. Nucleic Acids Research. 38 (suppl 2): W743-W748.

Gao, X. ., Xu, J. ., Li, S. ., & Li, M. . (2009). Predicting local quality of a sequence-structure alignment. J. Bioinform & Computat. Biol., 7:5 789-810.

Ma, B. ., & Lajoie, G. . (2009). De Novo Interpretation of Tandem Mass Spectra. In In The Current Protocol in Bioinformatics. John Wiley & Sons.

Gao, X. ., Bu, D. ., Xu, J. ., & Li, M. . (2009). Improving consensus contact prediction via server correlation reduction. BMC Structural Biology. 9:28, 1-14.

Brejova, B. ., Vinar, T. ., Chen, Y. ., Wang, S. ., Zhao, G. ., Brown, D. ., Li, M. ., & Zhou, Y. . (2009). Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence. Nucleic Acids Research 37: E52.

Alipanahi, B. ., Gao, X. ., Karakoc, E. ., Donaldson, L. ., & Li, M. . (2009). PICKY: a novel SVM-based NMR spectra peak picking method.