Brejova, B., Brown, D., & Vinar, T. (2003). Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity
References
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Xu, J., & Li, M. (2003). Assessing RAPTOR's new linear programming approach for fold recognition in CAFASP3 PROTEINS: Structure, Function, and Genetics, 53(S6):579-584. Invited Paper by CASP5 Organizer.
Xu, J., Li, M., Lin, G., Kim, D., & Xu, Y. (2003). Protein threading by linear programming
Deng, X., Li, G., Li, Z., Ma, B., & Wang, L. (2003). Genetic Design of Drug without Side Effects
Ma, B., Wang, Z., & Zhang, K. (2003). Alignment between Two Multiple Alignments
Lanctot, J. K., Li, M., Ma, B., Wang, S., & Zhang, L. (2003). Distinguishing String Search Problems Information and Computation 185: 41-55.
Bennett, C., Li, M., & Ma, B. (2003). Chain letters and evolutionary histories Chain Letters and Evolutionary Histories.
Brejova, B., Brown, D., & Vinar, T. (2003). Optimal spaced seeds for hidden Markov models, with applications to homologous coding regions
Li, M., Ma, B., Kisman, D., & Tromp, J. (2003). PatternHunter II: Highly Sensitive and Fast Homology Search
Zhang, L., Ma, B., Wang, L., & Xu, Y. (2003). Greedy Method for Inferring Tandem Duplication History Bioinformatics. 19(12): 1497-1504.