Li, M., Ma, B., Kisman, D., & Tromp, J. (2004). PatternHunter II: Highly Sensitive and Fast Homology Search Journal of Bioinformatics and Computational Biology. 2(3): 417-440.
References
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2004
Han, Y., Ma, B., & Zhang, K. (2004). SPIDER: Software for Protein Identification from Sequence Tags Containing De Novo Sequencing Error
2003
Kearney, P., Munro, J., & Phillips, D. (2003). Efficient generation of uniform samples from phylogenetic trees Retrieved from https://link.springer.com/chapter/10.1007/978-3-540-39763-2_14
Brejova, B., Brown, D., & Vinar, T. (2003). Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity
Liang, C., Smith, J., Hendrie, C., Siu, K., & Li, M. (2003). A comparative study of mass spec de novo sequencing software
Xu, J., Li, M., Lin, G., Kim, D., & Xu, Y. (2003). Protein threading by linear programming
Xu, J., & Li, M. (2003). Assessing RAPTOR's new linear programming approach for fold recognition in CAFASP3 PROTEINS: Structure, Function, and Genetics, 53(S6):579-584. Invited Paper by CASP5 Organizer.
Brejova, B., Brown, D., & Vinar, T. (2003). Optimal DNA signal recognition models with a fixed amount of intrasignal dependency
Ma, B., Wang, Z., & Zhang, K. (2003). Alignment between Two Multiple Alignments
Lanctot, J. K., Li, M., Ma, B., Wang, S., & Zhang, L. (2003). Distinguishing String Search Problems Information and Computation 185: 41-55.