Brown, D., Li, M., & Ma, B. (2004). The Homology Search Methods In In The Practical Bioinformatician, edited by Limsoon Wong. World Scientific.
References
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Xu, J., Brown, D., Li, M., & Ma, B. (2004). Optimizing Multiple Spaced Seeds for Homology Search
Bennett, C., Li, M., & Ma, B. (2003). Chain letters and evolutionary histories Scientific American, 288:6200 (feature Article), 76-81.
Ma, B., Zhang, K., & Liang, C. (2003). An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum
Brejova, B., Brown, D., & Vinar, T. (2003). Optimal DNA signal recognition models with a fixed amount of intrasignal dependency
Xu, J., Li, M., Kim, D., & Xu, Y. (2003). RAPTOR: optimal protein threading by linear programming
Benson, G., & Page, R. (2003). Algorithms in Bioinformatics https://doi.org/https://link.springer.com/book/10.1007\%2Fb13243
McConkey, B., Sobolev, V., & Edelman, M. (2003). Discrimination of native protein structures using atom-atom contact scoring Proceedings of the National Academy of Sciences,100:3215-3220.
Brejova, B., Brown, D., & Vinar, T. (2003). Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity
Li, M., Chen, X., Li, X., Ma, B., & Vitanyi, P. (2003). The Similarity Metric