Hudek, A., & Brown, D. (2005). Ancestral sequence alignment under optimal conditions BMC Bioinformatics 6:273.
References
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2005
Tang, T., Xu, J., & Li, M. (2005). Discovering sequence-structure motifs from protein segments and two applications
Brown, D. (2005). Multiple seeds for protein alignment IEEE ACM Transactions on Bioinformatics and Computational Biology 2: 29-38 (Special Issue for the Best Papers of the 2004 Workshop on Algorithms in Bioinformatics).
Ma, B., Wu, L., & Zhang, K. (2005). Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures
Brejova, B., Brown, D., Li, M., & Vinar, T. (2005). ExonHunter: a comprehensive approach to gene finding Bioinformatics 21:S1, I57-I65.
Kisman, D., Li, M., Ma, B., & Wang, L. (2005). tPatternHunter: Gapped, Fast and Sensitive Translated Homology Search Bioinformatics, 21:4, 542-544.
Xu, E., Brown, D., & Kearney, P. (2005). The use of functional domains to improve transmembrane protein topology prediction
Csuros, M., & Ma, B. (2005). Rapid homology search with two-stage extension and daughter seeds
Ma, B., & Zhang, K. (2005). The similarity metric and the distance metric
Brejova, B., Brown, D., Li, M., & Vinar, T. (2005). Clone of ExonHunter: a comprehensive approach to gene finding