Ma, B., Zhang, K., & Liang, C. (2005). An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum Journal of Computer and System Sciences (70): 418-430.
References
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Liu, J., Ma, B., & Zhang, K. (2005). Algorithms for searching RNA motifs in genomic sequences
Hao, Y., Zhu, X., Huang, M., & Li, M. (2005). Discovering patterns to extract protein-protein interactions from the literature: part II Bioinformatics, 21:15, 3294-3300.
Brejova, B., Brown, D., & Vinar, T. (2005). Vector seeds: an extension to spaced seeds Journal of Computer and System Sciences 70: 364-380.
Shan, B., Zhang, K., Ma, B., Zhang, C., & Lajoie, G. (2005). An Algorithm for Determining Glycan Structures from MS/MS Spectra
Ma, B., & Wu, X. (2005). Maximum network flow of multiple description codes Presented at the First Workshop on Network Coding, Theory and Applications conference.
Hudek, A., & Brown, D. (2005). Ancestral sequence alignment under optimal conditions BMC Bioinformatics 6:273.
Brown, D. (2005). Multiple seeds for protein alignment IEEE ACM Transactions on Bioinformatics and Computational Biology 2: 29-38 (Special Issue for the Best Papers of the 2004 Workshop on Algorithms in Bioinformatics).
Tang, T., Xu, J., & Li, M. (2005). Discovering sequence-structure motifs from protein segments and two applications
Brejova, B., Brown, D., Li, M., & Vinar, T. (2005). ExonHunter: a comprehensive approach to gene finding Bioinformatics 21:S1, I57-I65.