Brejova, B., Brown, D., Harrower, I., & Vinar, T. (2006). New bounds for motif finding in strong instances
References
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2006
Xu, J., Brown, D., Li, M., & Ma, B. (2006). Optimizing Multiple Spaced Seeds for Homology Search Journal of Computational Biology. 13(7): 1355-1368.
Liu, J., Ma, B., & Li, M. (2006). PRIMA: Peptide Robust Identification from MS/MS Spectra Journal of Bioinformatics and Computational Biology 4(1): 125-138.
Brown, D., & Harrower, I. (2006). Integer programming approaches to haplotype inference by pure parsimony IEEE ACM Transactions on Computational Biology and Bioinformatics, 3(2):141-154.
Ma, B., Wu, L., & Zhang, K. (2006). Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures Journal of Bioinformatics and Computational Biology 4(3): 709-720.
2005
Csuros, M., & Ma, B. (2005). Rapid homology search with two-stage extension and daughter seeds
Xu, E., Brown, D., & Kearney, P. (2005). The use of functional domains to improve transmembrane protein topology prediction
Brejova, B., Brown, D., Li, M., & Vinar, T. (2005). Clone of ExonHunter: a comprehensive approach to gene finding
Ma, B., & Zhang, K. (2005). The similarity metric and the distance metric
Liu, J., & Li, M. (2005). Finding cancer biomarkers from mass spectrometry data by decision lists Journal of Computational Biology. 12:7, 969-977.