Liu, J., Ma, B., & Li, M. (2005). PRIMA: Peptide Robust Identification from MS/MS Spectra
References
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Han, Y., Ma, B., & Zhang, K. (2005). An Automata Approach to Match Gapped Sequence Tags International Journal of Foundations of Computer Science 16(3): 487-497.
Brejova, B., Brown, D., Li, M., & Vinar, T. (2005). Pygenprop: a python library for interactive programmatic exploration and comparison of organism Genome Properties Bioinformatics 21 (S1):I57-I65.
Ma, B., Zhang, K., & Liang, C. (2005). An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum Journal of Computer and System Sciences (70): 418-430.
Liu, J., Ma, B., & Zhang, K. (2005). Algorithms for searching RNA motifs in genomic sequences
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Brejova, B., Brown, D., & Vinar, T. (2005). Vector seeds: an extension to spaced seeds Journal of Computer and System Sciences 70: 364-380.
Shan, B., Zhang, K., Ma, B., Zhang, C., & Lajoie, G. (2005). An Algorithm for Determining Glycan Structures from MS/MS Spectra
Ma, B., & Wu, X. (2005). Maximum network flow of multiple description codes Presented at the First Workshop on Network Coding, Theory and Applications conference.
Brejova, B., Brown, D., & Vinar, T. (2004). The most probable labeling problem in HMMs and its applications to bioinformatics