Xu, J., Brown, D., Li, M., & Ma, B. (2004). Optimizing Multiple Spaced Seeds for Homology Search
References
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Keich, U., Li, M., Ma, B., & Tromp, J. (2004). On spaced seeds for similarity search Discrete Applied Math.138, 253-263.
Eyal, E., Najmanovich, R., McConkey, B., Edelman, M., & Sobolev, V. (2004). Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins Journal of Computational Chemistry. 25:712-724.
Brown, D., & Harrower, I. (2004). A new integer programming formulation for the pure parsimony problem in haplotype analysis
Yao, D., Wang, J., Lu, Y., Noble, N., Sun, H., Zhu, X., … Qu, K. (2004). PathwayFinder: paving the way towards automatic pathway extraction
Li, M., Chen, X., Li, X., Ma, B., & Vitanyi, P. (2004). The Similarity Metric IEEE Transaction Information Theory 50: 3250-3264.
Han, Y., Ma, B., & Zhang, K. (2004). An Automata Approach to Match Gapped Sequence Tags
Brown, D. (2004). Multiple vector seeds for protein alignment
Jiang, T., Lin, G., Ma, B., & Zhang, K. (2004). The Longest Common Subsequence Problem for Arc-Annotated Sequences Journal of Discrete Algorithms 2(2): 257-270.
Badger, J., Kearney, P., Li, M., Tsang, J., & Jiang, T. (2004). Selecting the branches for an evolutionary tree: a polynomial time approximation scheme Journal of Algorithms, 51, 1-14.