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Ma, B., Zhang, K., Hendrie, C., Liang, C., Li, M., Doherty-Kirby, A., & Lajoie, G. (2003). PEAKS: Powerful Software for Peptide De Novo Sequencing by MS/MS Rapid Communications in Mass Spectrometry 20: 2337-2342.

Benson, G., & Page, R. (2003). Algorithms in Bioinformatics https://doi.org/https://link.springer.com/book/10.1007\%2Fb13243

Deng, X., Li, G., Li, Z., Ma, B., & Wang, L. (2003). Genetic Design of Drug without Side Effects

Chen, X., Li, M., Ma, B., & Tromp, J. (2002). DNACompress: fast and effective DNA sequence compression Bioinformatics. 18, 1696-1698.

Deng, X., Li, G., Li, Z., Ma, B., & Wang, L. (2002). A PTAS for Distinguishing (Sub)string Selection

Zhang, L., Ma, B., & Wang, L. (2002). Efficient Methods for Inferring Tandem Duplication History

Jiang, T., Lin, G., Ma, B., & Zhang, K. (2002). A General Edit Distance between Two RNA Structures Journal of Computational Biology 9(2): 371-388.

Li, M., Ma, B., & Wang, L. (2002). Finding similar regions in many sequences Journal of Computer and System Sciences (Special Issue for STOC’99). 65, 73-96.