Petrenko, P., Kurtz, D., Lobb, B., Neufeld, J., & Doxey, A. (2015). MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes BMC Biology. 13:92.
References
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2015
Liu, Y., Sun, W., Lajoie, G., Ma, B., & Zhang, K. (2015). An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database International Symposium on Bioinformatics Research and Applications 223-234. Norfolk, Virginia.
Cheng, Z., Li, J., Niu, Y., Zhang, X., Woody, O., Xiong, Y., … McConkey, B. (2015). Pathogen-secreted proteases activate a novel plant immune pathway Nature, 521:213.
Sun, W., Lajoie, G., Ma, B., & Zhang, K. (2015). A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry Presented at the International Symposium on Bioinformatics Research and Applications. 320-330 conference.
Lobb, B., Kurtz, D., Moreno-Hagelsieb, G., & Doxey, A. (2015). Remote homology and the functions of metagenomic dark matter Frontiers in Genetics. 6:234.
Johnston, C., Skinnider, M., Wyatt, M., Li, X., Yang, L., Zechel, D., … Magarvey, N. (2015). An Automated Genomes-to-Natural Products Platform (GNP) Nature Communications. DOI: 10.1038 Ncomms9421.
2014
DasGupta, B., He, X., Li, M., Tromp, J., & Zhang, L. (2014). Nearest neighbor interchange and related distances Encyclopedia of Algorithms, Springer.
Petrenko, P., & Doxey, A. (2014). mimicMe: a webserver for prediction and analysis of host-like proteins in microbial pathogens Bioinformatics. 31:590-592.
He, L., Xin, L., Shan, B., Lajoie, G., & Ma, B. (2014). GlycoMaster DB:Software to Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry Journal of Proteome Research. 13(9):3881-95.
Ackerman, M., Brown, D., & Loker, D. (2014). Effects of rooting via outgroups on ingroup topology in phylogeny International Journal of Bioinformatics Research and Applications 10(4 5): 426-446.