Ma, B., & Johnson, R. (2012). De Novo Sequencing and Homology Searching. Molecular \& Cellular Proteomics 11 DOI 10.1074 Mcp.O111.014902.
References
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2012
Gidvani, R., Sudmant, P., Li, G., DaSilva, L., McConkey, B., Duncker, B., & Ingalls, B. (2012). A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations BMC Systems Biology, 6:78.
Brown, D., & Truszkowski, J. (2012). Fast phylogeny algorithms using locality-sensitive hashing
Whelan, F., Meehan, C., Golding, G., McConkey, B., & Bowdish, D. (2012). The evolution of the class A scavenger receptors BMC Evolutionary Biology, 12:227.
Ackerman, M., Brown, D., & Loker, D. (2012). Effects of rooting via outgroups on ingroup topology in phylogeny Presented at the Proceedings of the International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 7 Pages conference.
Masella, A., Bartram, A., Truszkowski, J., Brown, D., & Neufeld, J. (2012). PANDAseq: paired-end assembler for illumina sequences BMC Bioinformatics Volume 13, Article Number: 31.
He, L., Han, X., & Ma, B. (2012). De Novo Sequencing with Limited Number of Post-Translational Modifications per Peptide
Bu, D., Li, S., & Li, M. (2012). Clustering 100,000 potein structure decoys in minutes IEEE/ACM/Trans./Comput./Biol./Bioinf./9:3,/765-773.
Zhang, J., Xin, L., Shan, B., Chen, W., Xie, M., Yuen, D., … Ma, B. (2012). PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification Molecular & Cellular Proteomics 11. DOI, 10.1074 Mcp.M111.010587.
Alipanahi, B., Krislock, N., Wolkowicz, H., Ghodsi, A., Donaldson, L., & Li, M. (2012). Protein Structure by Semidefinite Facial Reduction Presented at the RECOMB 2012. Pp. 1-11, Barcelona, Spain conference.