Tuesday, September 19, 2017


Bacteria find ways to whip infections into a frenzy

An electron microscope image of bacterial flagella.

A transmission electron microscope (TEM) image of isolated flagella from Clostridium haemolyticum. Black dots indicates the location of the newly discovered enzyme. Photograph courtesy of the Doxey Lab.

Researchers have discovered a new class of enzymes in hundreds of bacterial species, including some that cause disease in humans and animals. The discovery provides new insights into how bacteria invade their hosts. The research appeared last week in Nature Communications.

Andrew Doxey, a professor of biology at the University of Waterloo, led the team that found it in a new type of flagella, a whip-like appendage found on the outside of a bacterial cell that propels it. This new type of flagella is capable of digesting proteins in the bacteria’s environment. This discovery updates the long-held view that bacteria use their flagella mostly for movement, and demonstrates that flagella can also function as enzymes, like what happens with the spread of infection.

Doxey made the discovery through the use of bioinformatics, a growing scientific field that combines biology and computer science to study large biological datasets, such as genomes.

It is an exciting time for bioinformatics right now. We have thousands of genomes available to us and most of them are unexplored. It’s amazing that we can discover new biology by using a computer alone,” said Doxey, who is also cross-appointed to the Cheriton School of Computer Science at Waterloo. “What we found in this case is that many bacteria have repurposed their flagella to function as protein-degrading enzymes. There are thousands of these enzymes, making this potentially one of the largest enzyme structures known.”

Bacterial flagella are filaments composed of around 20,000 proteins that link up together and form structures about 10 micrometers long – roughly one-tenth the width of a human hair. While they can differ structurally, most flagella help with propulsion, and in some cases, they can attach bacteria to host cells. The discovery of flagella as enzymes means that some of them can also break down tough bonds in cells and tissues.

“We think that these enzymatic flagella may help some bacteria degrade and move through viscous environments. Interestingly, scientists have tried engineering flagella with this functionality before, but until now, we didn’t know that nature already did this,” said Doxey, a member of the Centre for Bioengineering and Biotechnology at Waterloo.

To test whether these new enzymatic flagella are active, scientists examined Clostridium haemolyticum, a pathogen that’s highly fatal in cows and sheep, and isolated the flagella. This pathogen has numerous flagella on one cell. They found that the flagella are capable of breaking down proteins found in cow liver — precisely where the organism infects.

The researchers also found the enzymes in bacteria that inhabit the human gut. Further research is needed to determine whether they play a beneficial or harmful role in humans.

The enzyme may improve understanding of how this organism and related pathogens cause disease. There may be ways of using these enzymes in biotechnology to degrade things we want to break down, including biofilms, sticky colonies of harmful bacteria. They are associated with more than 80 per cent of infections.

The Natural Sciences and Engineering Research Council and the Canadian Institutes of Health Research funded the work. It was a collaborative effort with the Christopher M. Overall lab of the University of British Columbia, John Austin of Health Canada, and the labs of Todd Holyoak and Trevor Charles, also biology professors at Waterloo.

Minimum wage increase on the horizon

Minimum wage rates in Ontario are increasing effective October 1, 2017, which affects certain campus employee paygroups as follows:

Minimum Wage Changes
Minimum wage rate Current wage rates Effective October 1, 2017
General Minimum Wage – applies to most employees $11.40 $11.60
Student Minimum Wage – applies to students under the age of 18 who work 28 hours a week or less when school is in session, or work during a school break or summer holidays $10.70 per hour $10.90 per hour
Liquor Servers Minimum Wage – applies to employees who serve liquor directly to customers or guests in licensed premises as a regular part of their work $9.90 per hour $10.10 per hour

Information is located on the Human Resources website including a link to the government’s website.

"The majority of our employees are not impacted by this change; however, there may be some employees where attention will be required by managers to ensure compliance," says a memo from Human Resources. "Please be aware of this change when hiring employees on a temporary contract. Users of the Casual Time Entry System (CTES) should also keep in mind the new legislation to ensure employees are paid compliantly."

Please direct any questions to hrhelp@uwaterloo.ca.

Conference had students examine their professional futures

A speaker at the Professional Futures conference.

Author and entrepreneur Stuart Knight speaks at the Professional Futures conference.

The School of Accounting and Finance (SAF) hosted its annual Professional Futures Conference (PFC) on Tuesday September 5 and Wednesday September 6 for 2A students in the Accounting and Financial Management, Math/CPA, Biotech/CPA, and Computing and Financial Management programs.

Award winning entrepreneur and critically acclaimed author Stuart Knight returned this year to deliver the event’s keynote “Four Conversations for Success”. The two-day event hosted at Bingeman’s Conference Centre and at the School of Accounting and Finance, focused on preparing SAF students for their first co-op job search this Fall and for a successful co-op employment experience this Winter.

PFC is the second of two major professional development events SAF students participate in.  Building on the learning from the Launch Your Career Conference in 1A, PFC encourages SAF students to explore different career pathways and the experiences that shape them, identify their transferable skills, navigate the job search process and experience a mock interview with industry professionals.

Students met with SAF Alumni to learn about where there SAF experiences have taken them. Dinesh Balakrishnan, a graduate of the School’s Masters of Accounting program, and now an active accounting and finance recruiter, offered advice on how to nail the interview and get that first job!

SAF would like to thank all the staff, faculty, speakers, and volunteers who made PFC 2017 a success. The School is now looking ahead to welcoming all 1A SAF students to Launch Your Career on Saturday, September 30, and introducing these students to the exciting professional experiences they will encounter in first year as they begin their professional journey as a SAF student.

Tuesday's notes

Construction has started at the Dana Porter and Davis Centre Libraries. "Your Library may be a bit noisier than usual, but free earplugs are available at both circulation desks for your studying pleasure," says a statement from the Library. "Visit the Library’s renovation site to learn about all the great changes coming in 2018!"

A swirl-like painting representing the University and its federated and affiliated institutions.A collection of paintings that honour the University, its 6 faculties, schools and affiliated institutions on the occasion of its 60th anniversary will be hanging for a limited time at the University Club. They will be available for viewing from Tuesday September 19 until the afternoon of Friday September 22. The painting featured at right represents the University and its federated and affiliated institutions.

The paintings were created by Dr. Wendy Fletcher, Renison University College's President and Vice-Chancellor as a gift from Renison to the University. The paintings will be shipped to Hong Kong for an exhibit at the Art Beatus Gallery, running from November 1 to 9 before they are auctioned as part of the Hong Kong 60th Anniversary Alumni Gala in support of student bursaries.

EngCon logo featuring a grasping robotic hand.

The Ideas Clinic, Mechanical and Mechatronics Engineering, and Electrical and Computer Engineering departments are launching EngCon, a new student convention focused on design projects.

The goal is to facilitate better design projects by bringing Waterloo Engineering undergraduate students together with speakers, workshops, resources, suppliers, and other opportunities in one place. It will take place this year on Saturday, September 23 on the main campus. This inaugural event is aimed at 3rd- and 4th-year MME and ECE undergrad students. However, all Waterloo Engineering students are welcome. Sessions will include:

  • Basic and advanced skill-building workshops,
  • Talks and panel discussions on various topics relevant to design projects,
  • Project idea pitches, and
  • a mixer for students to pitch ideas to industry representatives, alumni, and instructors.

Exhibitors will also be showing off products and services that may be useful to students working on design projects. For more information on the conference, check out the EngCon website.

It doesn't seem quite right to advertise this while we're in the throes of a late-summer heatwave, but here goes: toys are ready for ordering as part of the UWSA’s 29th annual Winterfest, which is being held December 10 from 1:00 to 3:00 p.m. at Columbia Icefields. "Come out and celebrate the upcoming Holiday Season!" says a note from the UWSA. "Join us for an afternoon of ice skating, snacks, crafts, balloon animals, and, of course, a visit from Santa Claus and his helpers. Everyone is welcome! If you wish your child (13 and under) to receive a gift from Santa, there is a charge of $10.00 per child. The cost for non-UWSA members is $5.00 per adult and $15.00 per child receiving a gift. Check the toy description (PDF), fill out and submit a registration form (PDF), along with payment to the UWSA Office (DC 3603) c/o Catherine Bolger, ext. 33566 by Wednesday, November 1.

Link of the day

35 years ago: :-)

When and where

Blind Date with a Science Book, Monday, September 18 to Sunday, September 24, Davis Centre Library.

National Postdoc Appreciation Week, Monday, September 18 to Friday, September 22.

Clarity in scientific writing, Tuesday, September 19, 1:00 p.m. to 3:00 p.m. 

Leather Jacket Day at the Waterloo Store, Wednesday, September 20, 10:00 a.m. to 4:00 p.m., Waterloo Store, SCH.

University Club Welcome Back Bar-B-Que, Wednesday, September 20, 11:30 a.m., University Club.

Noon Hour Concerts: A Journey to Romantic Vienna, Wednesday, September 20, 12:30 p.m., Conrad Grebel University College Chapel.

Seminar, “Distances between languages: algorithms and descriptional complexity,” Timothy Ng, postdoctoral fellow, Wednesday, September 20, 2:30 p.m., DC 1304.

Waterloo Institute for Complexity & Innovation (WICI) Open House, Wednesday, September 20, 2:00 p.m. to 4:00 p.m.

Science Café, Wednesday September 20, 4:30 to 6:00 p.m., Grad House. Registration required.

Working with our brand guidelines, Thursday, September 21, 2:00 p.m. to 3:30 p.m.

Ontario Universities Fair, Friday, September 22 to Sunday, September 24, Metro Toronto Convention Centre.

Optometry & Vision Science 50th Anniversary, Friday, September 22 to Sunday, September 24.

LGBTQ+ Making Spaces workshop, Friday, September 22, 9:00 a.m. to 12:30 p.m., NH 3318. Please register - seating is limited.

Changing the Historical Narrative: A sign ceremony, Friday, September 22, 12:00 p.m., Conrad Grebel University College garden.

Knowledge Integration seminar: Developing Escape Rooms with Secret City Adventures, Friday, September 22, 2:30 p.m., EV3-1408.

New Faculty & Family Welcome Dinner, Friday, September 22, 5:30 p.m. to 8:30 p.m., University Club. Please register by September 14.

School of Planning Induction Ceremony, Saturday, September 23, reception at 9:30 a.m., EV3 atrium, ceremony at 11:00 a.m., Theatre of the Arts, Modern Languages.

NEW - EngCon 2017, Saturday, September 23, 10:00 a.m., Engineering 5.

St. Paul’s Pow Wow in the Park, Saturday, September 23, 12:00 p.m. to 5:00 p.m., Waterloo Park near the bandshell.

Battle of Waterloo Warriors Football vs. Laurier, Staff and Faculty Appreciation Day, Saturday September 23, 1:00 p.m., Warrior Field.

CBB Seminar: "Physical and Chemical Approaches for Ocular Drug Delivery" with Dr. Ying Chau, Hong Kong University of Science and Technology (HKUST), Monday September 25, 2:00 p.m., EC4-2101a. 

WISE presents Geothermal Symposium, Tuesday, September 26, 8:00 a.m., Federation Hall.

Problem Pitch Competition applications close, “Apply to pitch important industry problems for a share of $7,500,” Tuesday, September 26, 11:59 p.m.

WIN/IQC Joint Distinguished Lecture featuring Philip Kim, "Physics on the frontier of quantum: Experimenting at the nanoscale," Tuesday, September 26, 3:00 p.m., QNC 0101.

Retirement celebration for Lorna Kropf, Tuesday, September 26, 4:00 p.m. to 6:00 p.m., QNC 2101. RSVP.

Resume tips, Wednesday, September, 27, 12:00 p.m. to 1:00 p.m., TC 1208.

NEW - Operation Wallacea Info Session, Biological Conservation Research Opportunities for Students, Wednesday, September 27, 12:30 p.m., QNC 1501.

Waterloo Women's Wednesdays: Women and Violence in Kashmir – A talk by Idrisa Pandit, Wednesday, September 27, 4:00 p.m., MC 5479.

2017 Stanley Knowles Humanitarian Service Lecture featuring Patrick Meier, PhD, "Humanitarian Robots in Action," Wednesday, September 27, 7:00 p.m., CIGI auditorium.

Velocity Start: What’s Your Problem?, Wednesday, September 27, 7:30 p.m., Velocity Start, SCH 2nd Floor.

Professionalism in your communication: How to talk to your professors, Thursday, September 28, 1:00 p.m. to 3:00 p.m.

NEW - Beyond 60: GRADtalks - Health, Aging and Well-Being, Thursday, September 28, 4:00 p.m., STC 0050.

2017/2018 Medieval Lecture Series featuring Karen Beck, Manager Historical and Special Collections, Harvard Law Library, "Digitizing Early Manuscripts at the Harvard Law Library," Thursday, September 28, reception at 4:30 p.m., SJ2, talk to follow, SJ2-2002.

David Sprott Distinguished Lecture featuring Susan A. Murphy, "Challenges in Developing Learning Algorithms to Personalize Treatment in Real Time", Thursday, September 28, 4:00 p.m., MC 4021.

Waterloo Arts Distinguished Lecture in Economics featuring Debraj Ray, Silver Professor, Faculty of Arts Sciences, and Professor of Economics at New York University, "Uneven growth and social conflict," Thursday, September 28, 4:30 p.m., Humanities Theatre.

Reunion 2017, Friday, September 29 and Saturday, September 30.

CBB Biomedical Discussion Group seminar featuring Dr. Mohammed S. Razzaque, MBBS, PhD, Department of Oral Health Policy & Epidemiology, Harvard School of Dental Medicine, Boston, Massachusetts, USA; Department of Pathology, Lake Erie College of Osteopathic Medicine, Erie, PA, "Endocrine regulation of phosphate homeostasis,” Friday, September 29, 1:00 p.m., EC4-2101a.

Making the Most of Your Mid-career Years – for recently tenured/continuing faculty, Friday, September 29, 8:45 a.m., EIT 3142. Registration required.

Anna Magdalena Kokits - Coast to Coast Tour, Friday, September 29, 7:00 p.m., Conrad Grebel Chapel.

60th Anniversary Reunion Concert featuring A Tribe Called Red, Friday, September 29, 8:00 p.m., Physical Activities Complex.

Further Education Boot Camp, Saturday, September 30, 2017, William M. Tatham Centre.

Applied Health Sciences Fun Run, Saturday, September 30, 8:30 a.m., AHS Expansion Building.

Hallman Lecture featuring Dr. John Frank, "Chronic disease prevention: "upstream" and "downstream" revisited," Tuesday, October 3, 2:30 p.m., Sun Life Financial Auditorium, Lyle Hallman Institute.

Noon Hour Concert: Duo Percussion, Wednesday, October 4, 12:30 p.m., Conrad Grebel Chapel.

NEW - University Club Thanksgiving Buffet, Thursday, October 5 and Friday, October 6, 11:30 a.m. to 2:00 p.m., University Club.

PhD oral defences

Psychology. Jeffrey Hughes, "Adaptive and Maladaptive Maximizing: Identifying the Correlates, Processes, and Outcomes of Maximizing in Decision-Making." Supervisor, Abigail Scholer. On deposit in the Arts graduate office, PAS 2428. Oral defence Thursday, September 21, 10:00 a.m., PAS 3026.

History. Andrew McLaughlin, ""The Best Covered War in History": Intimate Perspectives from the Battlefields of Iraq." Supervisor, Andrew Hunt. On deposit in the Arts graduate office, PAS 2428. Oral defence Thursday, September 21, 4:00 p.m., E5 3052.

History. Maureen Atkinson, "Replacing Sound Assumptions: Rediscovered Narratives of Post War Northern British Columbia." Supervisor, Ken Coates. On deposit in the Arts graduate office, PAS 2428. Oral defence Friday, September 22, 4:00 p.m., E5 3052.

School of Environment, Resources and Sustainability. Natalya Melnychuk,  "Assessing Legitimacy Within Collaborative Water Governance: How, When, and by Whom?" Supervisor, Rob de Loe. On display in the Faculty of Environment, EV1 335. Oral defence Tuesday, September 26, 2:30 p.m., EV1 354.

Applied Mathematics. Alexander Howse, "Nonlinear Preconditioning Methods for Optimization and Parallel-in-Time Methods for the Linear Advection Equation." Supervisor, Hans De Sterck. Thesis available from MGO - mgo@uwaterloo.ca. Oral defence Friday September 29, 9:30 a.m., MC 6460.