- Big Data Analytics
- Centre for Applied Cryptographic Research (CACR)
- Centre for Pattern Analysis and Machine Intelligence (CPAMI)
- Cryptography, Security, and Privacy Research Group (CrySP)
- Data Systems Group
- Generative Software Development Lab
- Innovative Transportation System Solutions Lab
- Real-time Embedded Software Group
- Software Engineering Lab
- Waterloo Management of Integration Manufacturing Systems (WATMIMS)