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Ackerman, M., D.G. Brown, and D. Loker, "Effects of rooting via outgroups on ingroup topology in phylogeny", Proceedings of the International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 7 pages, 2012.
Ackerman, M., D.G. Brown, and D. Loker, "Effects of rooting via outgroups on ingroup topology in phylogeny", International Journal of Bioinformatics Research and Applications 10(4/5): 426-446, 2014.
Adams, J., M.J. Mansfield, D.J. Richard, and A.C. Doxey, "Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function", Bioinformatics. 33:1338-1345, 2017.
Alhaider, A., A. Abdelgader, A. Turjoman, K. Newell, S. Hunsucker, B. Shan, B. Ma, D. Gibson, and M. Duncan, "Through the Eye of an Electrospray Needle: Mass Spectrometric Identification of the Major Peptides & Proteins in the Milk of the One Humped Camel (Camelus dromedarius)", Journal of Mass Spectrometry. 48 (7), 779-794, 2013.
Alipanahi, B., N. Krislock, H. Wolkowicz, A. Ghodsi, L. Donaldson, and M. Li, "Protein Structure by Semidefinite Facial Reduction", RECOMB 2012. pp. 1-11, Barcelona, Spain, 2012.
Alipanahi, B., X. Gao, E. Karakoc, L. Donaldson, and M. Li, "PICKY: a novel SVM-based NMR spectra peak picking method", ISMB, 2009.
Alipanahi, B., N. Krislock, H. Wolkowicz, A. Ghodsi, L. Donaldson, and M. Li, " Determining protein structures from NOESY distance constraints by semidefinite programming", J. Computat. Biol., 20:4 296-310, 2013.
Alipanahi, B., X. Gao, E. Karakoc, F. Balbach, S.C. Li, G. Feng, L. Donaldson, and M. Li, "Error tolerant NMR backbone resonance assignment for automated structure generation", J. Bioinform Computat. Biol., 1V26, 2011.
Alipanahi, B., X. Gao, E. Karakoc, L. Donaldson, and M. Li, "PICKY: a novel SVD-based NMR spectra peak picking method", Bioinformatics. ISMB'09 Special issue. 25: i268-i275, 2009.

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