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Tang, T., J. Xu, and M. Li, "Discovering sequence-structure motifs from protein segments and two applications", PSB'05. Hawaii, 2005.
Tran, N.H., R. Qiao, L. Xin, X. Chen, C. Lui, X. Zhang, B. Shan, A. Ghodsi, and M. Li, "Deep learning enables de novo peptide sequencing from data-independent acquisition mass spectrometry", Nature Methods, vol. Vol 16, 2019.
Tran, N.H., X. Zhang, and M. Li, " Deep Omics", Proteomics. 18:2. 1700319. (Cover page story), 2018.
Tran, N.H., X. Zhang, L. Xin, B. Shan, and M. Li, "De novo peptide sequencing by deep learning", Proc. National Academy of Sciences of the USA, 114(31), 8247-8252, 2017.
Tran, N.H., M.Z. Rahman, L. He, L. Xin, B. Shan, and M. Li, "Complete de novo assembly of monoclonal antibody sequences", Nature, Scientific Reports 6, doi:10.1038/srep31730, 2016.
Truszkowski, J., Y. Hao, and D.G. Brown, "Towards a practical O(n log n) phylogeny algorithm", Algorithms in Molecular Biology 7:32, 2012.

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