Publications

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Shan, B., G. Lajoie, B. Ma, and K. Zhang, " Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry", The 5th Asia Pacific Bioinformatics Conference. 297-306, 2007.
Shan, B., K. Zhang, B. Ma, C. Zhang, and G. Lajoie, " An Algorithm for Determining Glycan Structures from MS/MS Spectra", International Conference on Bioinformatics and its Applications, 2004. In Advances in Bioinformatics and Its Applications, World Scientific, 414-425, 2005.
Shan, B., G. Lajoie, B. Ma, and K. Zhang, " Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry", Journal of Bioinformatics and Computational Biology 6(1): 77-91, 2008.
Shen, J., V. Pagala, A. Breuer, J. Peng, B. Ma, and X. Wang, "Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra", Journal of Proteome Research, 2018.
Solis-Reyes, S., M. Avino, A. Poon, and L. Kari, "An open-source k-mer based machine learning tool for fast and accurate subtyping of HIV-I genomes", PLOS ONE 13(11): e0206409, 2018.
Stearns, J.C., O.Z. Woody, B.J. McConkey, and B.R. Glick, "Effects of bacterial ACC deaminase on Brassica napus gene expression", Molecular Plant-Microbe Interactions, 25:668-676, 2012.
Sun, W., G. Lajoie, B. Ma, and K. Zhang, " A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry", International Symposium on Bioinformatics Research and Applications. 320-330, 2015.
Sun, W., Y. Liu, G. Lajoie, B. Ma, and K. Zhang, "An Improved Approach for N-linked Glycan Structure Identification from HCD MS/MS Spectra", IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2701819, 2017.
Sun, W., M. Kuljanin, P. Pittock, B. Ma, K. Zhang, and G. Lajoie, "An Effective Approach for Glycan Structure De Novo Sequencing from HCD Spectra", IEEE transactions on nanobioscience 15 (2), 177-184, 2016.
Sun, S., F. Yang, Q. Yang, H. Zhang, Y. Wang, D. Bu, and B. Ma, "MS-Simulator: Predicting Y-Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions", Journal of Proteome Research. DOI: 10.1021/pr300235v, 2012.

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